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The most powerful and popular genomics resources
Name
|
Description
|
Resources
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Management and querying of many types of biological data
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Basic Local Alignment and Search Tool
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Performs multiple sequence alignments
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A pattern and motif recognition program
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DCODE.org Comparative Genomics Developments, a collection of powerful comparative genomics tools
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FASTA sequence algorithm
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Analysis tools for researchers
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A gene expression/molecular abundance repository and a curated, online resource for gene expression data
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A motif finder and analysis tool
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Ascribe biological significance to large lists of genes by annotating them with their corresponding GO categories
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A comprehensive protein signature resource
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Motif Discovery scan for nucleotide and protein motifs
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A Web-Based Tool for Promoter Analysis
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Multiple Expectation Maximum for Motif Elicitation
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Part of a motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences.
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Motif-based sequence analysis tools
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MEME suite motif finding and annotating tools
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Motif discovery tool that can detect conserved motifs in a set of DNA or protein sequences that you provide
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Pick primers from a DNA sequence.
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The UCSC Genome Browser Introduction
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UCSC Genome Browser advanced topics
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Additional tools at the UCSC Genome Browser
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UniProt, Universal Protein Resource
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The Viral Bioinformatics Resource Center
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Tools for Comparative Genomics
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A World Tour of Genome Resources for finding and learning the right resource for your needs.
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A bioinformatics resource for alternative splice events and transcripts for human, mouse, and rat
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A public repository for microarray gene expression data at the EBI
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Management and querying of many types of biological data
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Performs multiple sequence alignments
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Ensembl Genome Browser
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Older version of Ensembl Genome Browser
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FASTA sequence algorithm
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IntAct is an open source database and analysis resource for protein interaction data
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A comprehensive protein signature resource
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Mapped gene expression data in mouse brain
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A bioinformatics resource for alternative splice events and transcripts for human, mouse, and rat
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A public repository for microarray gene expression data at the EBI
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A Database of Heterogeneous Gene Expression Data Based on A Consistent Gene Nomenclature
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A tool that analyzes large lists of genes to provide biological meaning
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Database of Transcriptional Start Sites
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The home for Functional Glycomics research
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A gene expression/molecular abundance repository and a curated, online resource for gene expression data
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Provides an extensive amount of high quality images of gene expression in the central nervous system of the mouse.
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Phenotypes database
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Additional tools at the UCSC Genome Browser
| ||||
Tools for Comparative Genomics
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
Management and querying of many types of biological data
| ||||
A chemoinformatics and bioinformatics resource
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ENCODE Data at UCSC
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ENCyclopedia of DNA Elements
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Ensembl Genome Browser
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Older version of Ensembl Genome Browser
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A resource for the genes, genome and molecular biology of Drosophila melanogaster and related species.
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GBrowse User Introductory Tutorial
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A resource on rice and other grass genomes
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Map Viewer Genome Browser from NCBI
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The Mouse Genome Informatics resource provides data, tools, and analyses for the mouse model organism.
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Various Genome Browsers examined
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Plant Genome Database
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Rat Genome Database
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Saccharomyces Genome Database
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The Arabidopsis Information Resource
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The UCSC Genome Browser Introduction
| ||||
UCSC Genome Browser advanced topics
| ||||
Additional tools at the UCSC Genome Browser
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
molecular and genetic information on Caenorhabditis elegans and related species
| ||||
The Zebrafish Information Network
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Comprehensive Microbial Resource
| ||||
An extensive collection of data, resources and tools for prokaryotic genomic analysis
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Older version of Ensembl Genome Browser
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GBrowse User Introductory Tutorial
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IMG is a powerful community resource for the comparative analysis and annotation of microbial genome data.
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IMG/M provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence
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Various Genome Browsers examined
| ||||
Provides you with many research and analysis tools that can be used to examine the genomes of more than 50 microbial species from the domain archaea.
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The Viral Bioinformatics Resource Center
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Viral genome resources including single-stranded or double-stranded RNA or DNA viruses
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A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
Standardized term lists that can enhance interactions with biological databases
| ||||
Gene Ontology controlled vocabularies in biology
| ||||
Information Hyperlinked Over Proteins text mining resource
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PubMatrix, an on-line tool for multiplex literature mining of the PubMed database.
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PubMed access to biomedical research literature
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known and predicted protein-protein interactions
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Text-mining the biological literature
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A World Tour of Genome Resources for finding and learning the right resource for your needs.
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eXploring Medline abstracts
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Overview of NCBI's Entrez Search Resource
| ||||
Home to many commonly used publicly available databases and tools in molecular biology.
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
Database of Biological Systems
| ||||
Basic Local Alignment and Search Tool
| ||||
An extensive collection of data, resources and tools for prokaryotic genomic analysis
| ||||
A database of genotypes and phenotypes with extensive variation data and clinical details
| ||||
NCBI's SNP database
| ||||
DCODE.org Comparative Genomics Developments, a collection of powerful comparative genomics tools
| ||||
NCBI's Entrez tool for gene-centric information
| ||||
Overview of NCBI's Entrez Search Resource
| ||||
NCBI's Entrez Protein for amino acid-centric information
| ||||
A gene expression/molecular abundance repository and a curated, online resource for gene expression data
| ||||
GeneTests, a current, comprehensive genetic testing resource
| ||||
Provides an extensive amount of high quality images of gene expression in the central nervous system of the mouse.
| ||||
Map Viewer Genome Browser from NCBI
| ||||
Molecular Modeling Database at NCBI
| ||||
Home to many commonly used publicly available databases and tools in molecular biology.
| ||||
PubMed access to biomedical research literature
| ||||
Provides molecular sequence records to help locate gene and protein data.
| ||||
Viral genome resources including single-stranded or double-stranded RNA or DNA viruses
| ||||
A bioinformatics resource for alternative splice events and transcripts for human, mouse, and rat
| ||||
Comprehensive Microbial Resource
| ||||
A pattern and motif recognition program
| ||||
Database of Transcriptional Start Sites
| ||||
NCBI's Entrez tool for gene-centric information
| ||||
A motif finder and analysis tool
| ||||
Motif Discovery scan for nucleotide and protein motifs
| ||||
A Web-Based Tool for Promoter Analysis
| ||||
Multiple Expectation Maximum for Motif Elicitation
| ||||
microRNA sequences, targets and gene nomenclature
| ||||
Pick primers from a DNA sequence.
| ||||
Provides molecular sequence records to help locate gene and protein data.
| ||||
Additional tools at the UCSC Genome Browser
| ||||
Tools for Comparative Genomics
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
Database of Biological Systems
| ||||
An open-source software platform used for visualization and analysis of molecular interaction and network data
| ||||
A tool that analyzes large lists of genes to provide biological meaning
| ||||
GeneMANIA: Fast Gene Function Predictions
| ||||
A freely available open source software application for visualizing microarray data in the context of biological pathways.
| ||||
IntAct is an open source database and analysis resource for protein interaction data
| ||||
KEGG, The Kyoto Encyclopedia of Genes and Genomes
| ||||
Molecular Interaction Database
| ||||
A resource of pathway and network data and displays
| ||||
Knowledgebase of biological processes
| ||||
Older version of the current Reactome knowledgebase of biological processes.
| ||||
known and predicted protein-protein interactions
| ||||
A web-based or downloadable software platform used for visualization and analysis of networks and interaction pathways
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
A pattern and motif recognition program
| ||||
NCBI's Entrez Protein for amino acid-centric information
| ||||
The home for Functional Glycomics research
| ||||
GeneMANIA: Fast Gene Function Predictions
| ||||
A motif finder and analysis tool
| ||||
IntAct is an open source database and analysis resource for protein interaction data
| ||||
A comprehensive protein signature resource
| ||||
Motif Discovery scan for nucleotide and protein motifs
| ||||
Multiple Expectation Maximum for Motif Elicitation
| ||||
Molecular Interaction Database
| ||||
Molecular Modeling Database at NCBI
| ||||
A resource of pathway and network data and displays
| ||||
Protein Domain families
| ||||
Database of protein domains, families and functional sites
| ||||
RCSB Protein Data Bank
| ||||
Protein domain annotation and analysis of domain architectures
| ||||
known and predicted protein-protein interactions
| ||||
The Protein Structure Initiative Structural Biology Knowledgebase
| ||||
Additional tools at the UCSC Genome Browser
| ||||
UniProt, Universal Protein Resource
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
Characterize the molecular genetic changes that cause a normal cell to become a cancer cell
| ||||
A database of genotypes and phenotypes with extensive variation data and clinical details
| ||||
NCBI's SNP database
| ||||
Database of Genomic Variants, DGV, catalogs and displays structural variation in the human genome
| ||||
An archived database associating human genes and polymorphisms with diseases
| ||||
GeneTests, a current, comprehensive genetic testing resource
| ||||
A collection of data describing the effects of genetic variability on human health and disease
| ||||
A database providing rapid access to human genotype data and analysis tools.
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HapMap, a database and analysis resource of human variation
| ||||
Human pedigree diagram tools
| ||||
National Institute for Environmental Health Sciences Environmental Genome Project (EGP) SNPs
| ||||
Online Mendelian Inheritance in Man
| ||||
Phenotypes database
| ||||
PubMed access to biomedical research literature
| ||||
Human SNPs in genes
| ||||
Tools for Comparative Genomics
| ||||
A World Tour of Genome Resources for finding and learning the right resource for your needs.
| ||||
Analyze and visualize molecular interaction networks
| ||||
An integrated view of gene structure and SNP variations
| ||||
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